PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG035528t1
Common NameTCM_035528
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 337aa    MW: 36932.2 Da    PI: 7.5068
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG035528t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.95.2e-09176234563
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       kr++r   NR +A rs +RK  ++ eLe+kv++L++e + L  ++ +l+     l++e+
  Thecc1EG035528t1 176 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAQVTMLQRDTTGLTAEN 234
                       9********************************************99998888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-15172236IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.013174237IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-10176230No hitNo description
PfamPF001701.2E-7176230IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.61E-11176228No hitNo description
CDDcd147034.22E-23177226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007231Biological Processosmosensory signaling pathway
GO:0008272Biological Processsulfate transport
GO:0009294Biological ProcessDNA mediated transformation
GO:0009652Biological Processthigmotropism
GO:0009970Biological Processcellular response to sulfate starvation
GO:0045596Biological Processnegative regulation of cell differentiation
GO:0051170Biological Processnuclear import
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0051019Molecular Functionmitogen-activated protein kinase binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEQKLTVEID QMPPRGAHHR RAHSDTTFRF DDLLLFDPSD LDLSSLDLPA SSSNPAPPPV  60
IPVPADSSDD SSSNGPPRSS HSNPRHISSH LRSLSVDSDF FDGLGLTGPA ISGGAGDEKF  120
GGKGGVGEKR VHHRHSNSMD GSTTASFEIE SLMAVDGIKK AMAPDRLAEL ALIDPKRAKR  180
ILANRQSAAR SKERKIRYTS ELERKVQTLQ TEATNLSAQV TMLQRDTTGL TAENKELKLR  240
LQAMEQQAQL RDALNDALRE EVQRLKIQAG QMSAMNGNPF NRGLPPQFLP HQAAPHHFSG  300
HQPTQQQQQQ MSQSSTNNQT LNGQPQPCFM DFNQRA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00184DAPTransfer from AT1G43700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019465.10.0VIRE2-interacting protein 1, putative
SwissprotQ9MA753e-96VIP1_ARATH; Transcription factor VIP1
TrEMBLA0A061FHA90.0A0A061FHA9_THECC; VIRE2-interacting protein 1, putative
STRINGVIT_18s0076g00330.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79932639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.16e-73VIRE2-interacting protein 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]